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2010
R.-A., S., Short, S.M., Schroeder, D.C. (2010).  Fingerprinting aquatic virus communities. Manual of Aquatic Viral Ecology. 9-18.
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Short, C.M., Rusanova, O., Short, S.M. (2010).  Quantification of virus genes provides evidence for seed-bank populations of phycodnaviruses in Lake Ontario, Canada. The ISME Journal.
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Short, S.M., Chen, F., Wilhelm., S.W. (2010).  The construction and analysis of marker gene libraries. Manual of Aquatic Viral Ecology. 82-91.
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2009
S. M. Short, C.M.Short. (2009).  Quantitative PCR reveals transient and persistent algal viruses in Lake Ontario, Canada. Environmental Microbiology . 11(10), 2639-2648.
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2008
Short, S.M., Short, C.M. (2008).  Diversity of algal viruses in various North American freshwater environments. Aquatic Microbial Ecology. 51, 13-21.
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2007
Short, S., Zehr, J. (2007).  Nitrogenase gene expression in the Chesapeake Bay estuary. Environmental Microbiology. 9(6), 1591-1596.
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2005
Short, S., Zehr, J. (2005).  Quantitative analysis of nifH genes and transcripts from aquatic environments. Methods in Enzymology. 380-394.
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2004
Brussaard, C., Short, S., Frederickson, C., Suttle, C. (2004).  Isolation and phylogenetic analysis of novel viruses infecting the phytoplankter Phaeocystis globosa (Prymnesiophyceae). Applied and Environmental Microbiology. 3700-3705.
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Short, S., Jenkins, B., Zehr, J. (2004).  Spatial and temporal distribution of two diazotrophic bacteria in the Chesapeake Bay. Applied and Environmental Microbiology. 2186-2192.
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Comeau, A., Short, S., Suttle, C. (2004).  The use of degenerate-primed random amplification of polymorphic DNA (DP-RAPD) for strain-typing and inferring the genetic similarity among closely related viruses. Journal of Virological Methods. 95-100.
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2003
Short, S., Suttle, C. (2003).  Temporal dynamics of natural communities of marine algal viruses and eukaryotes. Aquatic Microbial Ecology. 107-119.
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Frederickson, C., Short, S., Suttle, C. (2003).  The physical environment affects cyanophage communities in British Columbia inlets. Microbial Ecology. 348-357.
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2002
Short, S., Suttle, C. (2002).  Sequence analysis of marine virus communities reveals groups of related algal viruses are widely distributed in nature. Applied and Environmental Microbiology. 1290-1296.
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2000
Short, S., Suttle, C. (2000).  Denaturing gradient gel electrophoresis resolves virus sequences amplified with degenerate primers. Biotechniques. 20-26.
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1999
Short, S., Suttle, C. (1999).  The use of polymerase chain reaction and denaturing gradient gel electrophoresis to study diversity in natural virus communities. Hydrobiologia. 19-32.
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